Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs6087197 chr20:29514218 A/G 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs6087201 chr20:29520996 G/T 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs6087202 chr20:29521037 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs6087204 chr20:29528551 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs6087206 chr20:29530608 G/A 1.95E-13 119 38.13 50.1 6 KM Plot
THYM rs6087207 chr20:29530880 C/T 7.56E-6 119 38.23 50.1 10.78 KM Plot
THYM rs6087208 chr20:29532384 G/A 2.08E-13 119 37.63 50.53 6 KM Plot
THYM rs6087210 chr20:29537342 A/G 7.56E-6 119 38.23 50.1 10.78 KM Plot
THYM rs6087349 chr20:29512256 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs6087352 chr20:29513662 A/G 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs6087353 chr20:29514067 C/A 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs6087355 chr20:29514430 G/A 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs60887045 chr3:52992278 C/A 0.000238 118 44.38 23.75 25.63 KM Plot
THYM rs60911559 chr19:43352117 T/C 0.000134 118 44.38 26 28.43 KM Plot
THYM rs60930239 chr7:29688544 A/G 5.22E-13 118 38.33 46.07 6 KM Plot